Publications

In this section the scientific publications of the X-omics partners are displayed. The X-omics consortium is a very large consortium and therefor generates a lot of publications (on average 50 publications per month). To inform you about the most important publications with a high impact, we have added a selection of publications below (displayed individually and searchable per expertise).

Associations between the CADM2 gene, substance use, risky sexual behavior, and self-control: A phenome-wide association study

Arends RM, Pasman JA, Verweij KJH, Derks EM, Gordon SD, Hickie I, Thomas NS, Aliev F, Zietsch BP, van der Zee MD, Mitchell BL, Martin NG, Dick DM, Gillespie NA, de Geus EJC, Boomsma DI, Schellekens AFA, Vink JM.Addict Biol. 2021 Feb 18:e13015. doi: 10.1111/adb.13015. Online ahead of print.

PMID: 33604983

Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science.

Weintraub, ST. et al. (2019). J Proteome Res. 18, 575.

PMID: 30704244

PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.

Ressa, A. et al. (2019). J Proteome Res. 18, 576-584.

PMID: 30525654

Presence of Genetic Variants Among Young Men With COVID-19.

Van der Made, Cl. (2020). JAMA.

PMID: 32706371

Mutational signature in colorectal cancer caused by genotoxic pks + E. coli.

Pleguezuelos-Manzano, C. et al. (2020). Nature.

PMID: 32106218

SARS-CoV-2 productively infects human gut enterocytes.

Lamers, MM. et al. (2020). Science.

PMID: 32358202

Effect of metabolic genetic variants on long-term disease comorbidity in patients with type 2 diabetes

Abedian S et al. 2021. Sci Rep 11(1):2794.

PMID: 33531528

Reproducibility of Targeted Lipidome Analyses (Lipidyzer) in Plasma and Erythrocytes over a 6-Week Period

Loef, M. et al. (2020). Metabolites.

PMID: 33396510

Inhibition of ∆24-dehydrocholesterol reductase activates pro-resolving lipid mediator biosynthesis and inflammation resolution.

Körner, A. et al. (2019). Proc Natl Acad Sci U S A. 116, 20623 – 20634.

PMID: 31548397

Cholesterol Metabolism Is a Druggable Axis that Independently Regulates Tau and Amyloid-β in iPSC-Derived Alzheimer’s Disease Neurons.

van der Kant, R. et al. (2019). Cell Stem Cell. 24, 363-275.

PMID: 30686764

Fast LC-ESI-MS/MS analysis and influence of sampling conditions for gut metabolites in plasma and serum.

van der Laan, T. et al. (2019). Sci Rep. 9, 12370.

PMID: 31451722

Profiling the proteoforms of urinary prostate-specific antigen by capillary electrophoresis - mass spectrometry

Moran AB, Domínguez-Vega E, Nouta J, Pongracz T, de Reijke TM, Wuhrer M, Lageveen-Kammeijer GSM.J Proteomics. 2021 Feb 19;238:104148. doi: 10.1016/j.jprot.2021.104148. Online ahead of print.

PMID: 33618028

Combined kinesin-1 and kinesin-3 activity drives axonal trafficking of TrkB receptors in Rab6 carriers

Zahavi EE et al. (2021). Dev Cell. S1534-5807(21)00068-X. Online ahead of print.

PMID: 33571451

High-Resolution mRNA and Secretome Atlas of Human Enteroendocrine Cells.

Beumer, J. et al. (2020). Cell.

PMID: 32407674

Metabolic changes related to the IDH1 mutation in gliomas preserve TCA-cycle activity: An investigation at the protein level.

Dekker, LJM. et al. (2020). FASEB J. 34, 3646 – 3657.

PMID: 31960518

SARS-CoV-2 productively infects human gut enterocytes.

Lamers, MM. et al. (2020). Science.

PMID: 32358202

Integrating Serum Protein Electrophoresis with Mass Spectrometry, A New Workflow for M-Protein Detection and Quantification.

Zajec, M. et al. (2020). J Proteome Res.

PMID: 31895568

Highly sensitive CE-ESI-MS analysis of N-glycans from complex biological samples.

Lageveen-Kammeijer, GSM. et al. (2019). Nat Commun. 10, 2137.

PMID: 31086181

Automated workflow composition in mass spectrometry-based proteomics.

Palmblad, M. et al. (2019). Bioinformatics. 35, 656 – 664.

PMID: 30060113

Special Issue on Software Tools and Resources: Acknowledging the Toolmakers of Science.

Weintraub, ST. et al. (2019). J Proteome Res. 18, 575.

PMID: 30704244

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study.

Lacobucci, C. et al. (2019). Anal Chem. 91, 6953-6961.

PMID: 31045356

Recommendations for performing, interpreting and reporting hydrogen deuterium exchange mass spectrometry (HDX-MS) experiments.

Masson, GR. et al. (2019). Nat Methods. 16, 595-602.

PMID: 31249422

PaDuA: A Python Library for High-Throughput (Phospho)proteomics Data Analysis.

Ressa, A. et al. (2019). J Proteome Res. 18, 576-584.

PMID: 30525654

Expanding the mass range for UVPD-based native top-down mass spectrometry.

Greisch, JF. et al. (2019). Chem Sci. 10, 7163-7171.

PMID: 31588283

Targeting proline in (phospho)proteomics.

van der Laarse, SAM. et al. (2019). FEBS J.

PMID: 31863553

NWO logoThis research was (partially) funded by NWO, project 184.034.019