DATA ANALYSIS, INTEGRATION & STEWARDSHIP SERVICES

Expertise Associated pipelines / workflows
Analysis of genomics, transcriptomics, proteomics and metabolomics data Whole exome and whole genome analysis pipelines Microbiome analysis pipeline RNA-seq analysis pipelines Proteomics analysis pipelines Metabolomics analysis pipelines
Integration of X-omics data: statistical and knowledge-based integration Dimensionality reduction techniques Pathway and network-based integration Proteogenomics pipelines Accurate hypothesis testing for Gaussian Graphical Models  
FAIRification of -omics data Guidelines and tools for FAIR representation of clinical, sample, measurement, bioinformatics methods, and -omics data Machine-readable consents and conditions of use BBMRI Biobank and biosample catalogues    
Reproducible data analysis Github for versioned code, script and software managementa Ansible playbooks for software and tool deployment      
Workflow management Nextflow KNIME Kimble Galaxy MOLGENIS Compute for large scale data and computational workflow management in a distributed execution environment
ICT Infrastructures
Digital Research Environment (www.researchenvironment.org) for secure, collaborative, cloud-based analyses Local High Performance Computing clusters        
NWO logoThis research was (partially) funded by NWO, project 184.034.019