Analysis of genomics, transcriptomics, proteomics and metabolomics data |
Whole exome and whole genome analysis pipelines |
Microbiome analysis pipeline |
RNA-seq analysis pipelines |
Proteomics analysis pipelines |
Metabolomics analysis pipelines |
Integration of X-omics data: statistical and knowledge-based integration |
Dimensionality reduction techniques |
Pathway and network-based integration |
Proteogenomics pipelines |
Accurate hypothesis testing for Gaussian Graphical Models |
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FAIRification of -omics data |
Guidelines and tools for FAIR representation of clinical, sample, measurement, bioinformatics methods, and -omics data |
Machine-readable consents and conditions of use |
BBMRI Biobank and biosample catalogues |
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Reproducible data analysis |
Github for versioned code, script and software managementa |
Ansible playbooks for software and tool deployment |
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Workflow management |
Nextflow |
KNIME |
Kimble |
Galaxy |
MOLGENIS Compute for large scale data and computational workflow management in a distributed execution environment |